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Species belonging to selected taxon:

Physcomitrella patens



ABOUT THIS RECORD

ID: MNEST006978
species: Physcomitrella patens
miRNA family: MIR319
source: miRNEST

Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGGACTGAAGGGAGCTCCAC

miRNA*
GGAGCTCCGTTTCGGTCCAATA

mismatches: 0
bulges: 1

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pre-miRNA
GATTGCGGATACCTTGATTGTGGAGCTCCGTTTCGGTCCAATAGTGGCTGCGACGGAAGGTGGTCCCGCTGCCGAATCACACGTCCGGGTTGCTTATCGG
GGCAGGGCCCCGATACGGTATCCGAACGTTTGTCCCGGGAACTGGTCGACCTTCCGCCCGGCGTCTCTTGGACTGAAGGGAGCTCCACTCTTGGCGTCTC
TGGCAT


dot-bracket secondary structure
...(((((((.((..((..((((((((((.(((((((((((.((..((((...(((((((((((((((.........((.((((.(((((.(((((((((
(((...))))))))).)))))))).)))).))...)))).))).....))))))))..))))..)).)))))))))))))))))))))))..)).)))).
..))).



SIMILARITIES
miRBase ppt-MIR319a: 8e-93

PMRD ppt-miR319a: 8e-93

microPC miR319: 0.0002
UniProt no hits

RFAM MIR159: 0.0002
most similar mature miRNAs

Identical with: ppt-miR319a from PMRD (MNEST051384)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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